Index

A

add_a_match() (frags.read.Read method)

B

Breakpoint (class in frags.read)

build_graph() (in module frags.core)

F

find_hits() (in module frags.core) frags module

frags.core module frags.read module

G

get_all_queries() (in module frags.core) get_breakpoints() (frags.read.Read method) get_matches() (frags.read.Read method)

get_recombinations() (in module frags.core) get_ref() (frags.read.Read method) get_reference() (in module frags.core) get_strand() (frags.read.Read method)

I

is_include_in() (frags.read.Match method)

M

Match (class in frags.read) module frags frags.core frags.read

N

next_read() (in module frags.core)

O

output() (frags.read.Breakpoint method) (frags.read.Read method)

output_read() (frags.read.Match method) output_ref() (frags.read.Match method)

P

prepare_blast_file() (in module frags.core)

process_blast_res() (in module frags.core)

R

Read (class in frags.read)

reverse_complement() (in module frags.core)

W

write_header() (in module frags.core)